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Master MetaData: This table details all GutCyc samples and their source.
Sample Statistics: This table provides summary statistics about each GutCyc sample including, source, assembly size, number of annotations, reactions, and pathways predicted.
Output: A detailed description of the output data can be found in the GutCyc paper. Briefly, using the MetaPathways pipeline, metagenomic assemblies are quality controlled, open reading frames are predicted and annotated using several reference databases. Metabolic pathways are then predicted using pathway-tools.
Overview: GutCyc is a publicly-available and licenced resource and portal providing pathway annotation data for environmental metagenomic samples derived from the metagenomic studies of the human gut. GutCyc provides consistent annotations and metabolic pathway predictions, making possible comparative community analyses. GutCyc data is graciously hosted by figshare under Collection DOI https://dx.doi.org/10.6084/m9.figshare.c.3283562
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Download summary statistics for the data processing of every GutCyc sample